Keybinding Note: This extension uses Emacs-style keybindings where Ctrl is used on all platforms (not Cmd on Mac), except where explicitly noted. Mac alternatives are shown as Cmd where applicable.

✅ Introduction

This document provides a comprehensive reference of all commands available in the Scimax VS Code extension. Commands are organized by feature area for easy lookup.

Note on Keybindings: All keybindings shown use the format key for standard keys and C-x for C-x (or s-x on macOS). When (org) or (md) appears, the binding is context-sensitive.

✅ Document Structure

✅ Folding and Visibility

Command ID	Description	Default Keybinding
cmd:scimax.org.toggleFold	Toggle Fold at Cursor	TAB (on heading)
cmd:scimax.org.cycleGlobalFold	Cycle Global Folding	S-TAB

✅ Headings

Command ID	Description	Default Keybinding
cmd:scimax.heading.insert	Insert Heading	C-RET / M-RET
cmd:scimax.heading.insertSub	Insert Subheading	-
cmd:scimax.heading.promote	Promote Heading	M-LEFT (on heading)
cmd:scimax.heading.demote	Demote Heading	M-RIGHT (on heading)
cmd:scimax.heading.promoteSubtree	Promote Subtree	M-S-LEFT (not in table)
cmd:scimax.heading.demoteSubtree	Demote Subtree	M-S-RIGHT (not in table)
cmd:scimax.heading.moveUp	Move Heading Up	M-UP
cmd:scimax.heading.moveDown	Move Heading Down	M-DOWN

✅ Org-Mode Heading Navigation

Command ID	Description	Default Keybinding
cmd:scimax.org.jumpToHeading	Jump to Heading	C-c C-j
cmd:scimax.org.nextHeading	Next Heading	C-c C-n
cmd:scimax.org.previousHeading	Previous Heading	C-c C-p
cmd:scimax.org.parentHeading	Parent Heading	-
cmd:scimax.org.promoteHeading	Promote Heading	M-LEFT (heading)
cmd:scimax.org.demoteHeading	Demote Heading	M-RIGHT (heading)
cmd:scimax.org.promoteSubtree	Promote Subtree	M-S-LEFT
cmd:scimax.org.demoteSubtree	Demote Subtree	M-S-RIGHT
cmd:scimax.org.moveSubtreeUp	Move Subtree Up	M-UP (heading)
cmd:scimax.org.moveSubtreeDown	Move Subtree Down	M-DOWN (heading)
cmd:scimax.org.insertHeading	Insert Heading	C-RET (heading)
cmd:scimax.org.insertSubheading	Insert Subheading	-
cmd:scimax.org.insertInlineTask	Insert Inline Task	-
cmd:scimax.org.killSubtree	Kill Subtree	-
cmd:scimax.org.cloneSubtree	Clone Subtree	-
cmd:scimax.org.refile	Refile Subtree	C-c C-w
cmd:scimax.org.refileCopy	Copy Subtree to Target	C-c M-w
cmd:scimax.org.markSubtree	Mark (Select) Subtree	m (speed)
cmd:scimax.org.addIdToHeading	Add ID to Heading	-

✅ Granular Addressing (Anchors)

These commands implement granular addressing: pointing a link at a location finer than a heading. An anchor is a native org target (<<name>>), radio target (<<<name>>>), or #+NAME: keyword. Because the anchor lives in the text, it travels with its content when you move a paragraph and disappears with it when you delete one (the link then becomes a detectable orphan). Anchors are indexed in the scimax database, so [[name]] links resolve across files and back-links are tracked at the object level.

Command ID	Description	Default Keybinding
cmd:scimax.org.linkToHere	Insert a readable `<<anchor>>` at point, copy `[[anchor]]` to clipboard	-
cmd:scimax.org.showBacklinks	Show object-level back-links to the anchor at point	-

Following a [[name]] link first searches the current file, then falls back to the database to resolve an anchor of that name anywhere in the workspace.

✅ Dialog Notes

Attach a decision, question, or comment to a passage. A note is an org footnote with a note- label prefix, collected under a * Notes :noexport: section and excluded from exports. See Dialog Notes.

Command ID	Description	Default Keybinding
cmd:scimax.org.addNote	Add a Note/Decision/Question footnote on the selection	-
cmd:scimax.notes.refresh	Refresh the Notes panel	-

✅ DWIM Commands

Command ID	Description	Default Keybinding
cmd:scimax.org.dwimReturn	DWIM Return	-
cmd:scimax.insertNewline	Insert Newline	-
cmd:scimax.org.dwimComment	DWIM Comment (toggle =# = on lines)	M-;

✅ Org Utility Commands

Command ID	Description	Default Keybinding
cmd:scimax.org.updateStatistics	Update Statistics Cookie	-
cmd:scimax.org.renumberList	Renumber Ordered List	-
cmd:scimax.org.updateDynamicBlock	Update Dynamic Block	C-c C-x C-u (org)
cmd:scimax.org.fillParagraph	Fill/Unfill Paragraph	M-q

✅ Lists

Commands for manipulating org-mode and markdown lists.

Command ID	Description	Default Keybinding
cmd:scimax.list.cycleIndent	Cycle List Item Indent	-
cmd:scimax.list.cycleOutdent	Cycle List Item Outdent	-

TODO and Tasks

✅ TODO Keywords

Command ID	Description	Default Keybinding
cmd:scimax.org.cycleTodo	Cycle TODO State	C-c C-t
cmd:scimax.org.showTodos	Show TODOs in Document	-

✅ Task Dependencies

Express dependencies between TODO tasks (org-depend style). See Task Dependencies for the full guide.

Command ID	Description	Default Keybinding
cmd:scimax.org.addDependency	Add Dependency (depends on…)	-
cmd:scimax.org.gotoBlocker	Go to Blocking Dependency	-
cmd:scimax.org.showDependencies	Show Task Dependencies	-

✅ Project Management

Task tables, Gantt charts, a dependency graph, and a people database. See Project Management for the full guide.

Command ID	Description	Default Keybinding
cmd:scimax.org.insertProjectTable	Insert Project Task Table	-
cmd:scimax.org.insertGantt	Insert Gantt Chart	-
cmd:scimax.org.showTaskGraph	Show Task Dependency Graph	-
cmd:scimax.org.newPerson	New Person	-
cmd:scimax.org.assignTask	Assign Task to Person	-

✅ Contacts & Entities

Fuzzy-pick a tagged/propertied heading (contact, location, reagent, …) and act on it. See Contacts, Locations & Entity Selector.

Command ID	Description	Default Keybinding
cmd:scimax.org.pickEntity	Pick Entity (Contact/Location/…)	-

✅ Checkboxes

Command ID	Description	Default Keybinding
cmd:scimax.org.toggleCheckbox	Toggle Checkbox	-
cmd:scimax.org.insertCheckbox	Insert Checkbox	-

✅ Markdown Tasks

Command ID	Description	Default Keybinding
cmd:scimax.markdown.toggleCheckbox	Toggle Checkbox	C-c C-c
cmd:scimax.markdown.insertTask	Insert Task	-
cmd:scimax.markdown.insertDueDate	Insert Due Date	C-c C-d
cmd:scimax.markdown.insertScheduledDate	Insert Scheduled Date	C-c C-s
cmd:scimax.markdown.insertPriority	Insert Priority	-
cmd:scimax.markdown.showAgenda	Show Agenda	-
cmd:scimax.markdown.showTodaysTasks	Show Today's Tasks	-
cmd:scimax.markdown.showTasksByProject	Show Tasks by Project	-
cmd:scimax.markdown.showTasksByTag	Show Tasks by Tag	-

✅ Tables

✅ Basic Table Operations

Command ID	Description	Default Keybinding
cmd:scimax.table.create	Create Table	C-c \vert
cmd:scimax.table.align	Align Table	-
cmd:scimax.table.nextCell	Next Table Cell	-
cmd:scimax.table.prevCell	Previous Table Cell	-
cmd:scimax.table.insertSeparator	Insert Table Separator	C-c -

✅ Row and Column Operations

Command ID	Description	Default Keybinding
cmd:scimax.table.insertRowBelow	Insert Table Row Below	M-S-down
cmd:scimax.table.insertRowAbove	Insert Table Row Above	M-S-up
cmd:scimax.table.deleteRow	Delete Table Row	M-S-BACKSPACE
cmd:scimax.table.insertColumnLeft	Insert Table Column Left	-
cmd:scimax.table.insertColumnRight	Insert Table Column Right	M-S-RIGHT (in table)
cmd:scimax.table.deleteColumn	Delete Table Column	M-S-LEFT (in table)
cmd:scimax.table.moveRowUp	Move Table Row Up	-
cmd:scimax.table.moveRowDown	Move Table Row Down	-
cmd:scimax.table.moveColumnLeft	Move Table Column Left	-
cmd:scimax.table.moveColumnRight	Move Table Column Right	-

✅ Advanced Table Operations

Command ID	Description	Default Keybinding
cmd:scimax.table.gotoNamed	Go to Named Table	-
cmd:scimax.table.export	Export Table	-
cmd:scimax.table.import	Import Table from Clipboard	-
cmd:scimax.table.importFile	Import Table from File	-
cmd:scimax.table.sumColumn	Sum Column	-
cmd:scimax.table.averageColumn	Average Column	-
cmd:scimax.table.sortByColumn	Sort by Column	C-c ^

✅ Table Formulas

Command ID	Description	Default Keybinding
cmd:scimax.table.recalculate	Recalculate Table Formulas	C-c C-c (tblfm)
		C-c * (org)
cmd:scimax.table.insertColumnFormula	Insert Column Formula	-
cmd:scimax.table.insertFieldFormula	Insert Field Formula	-
cmd:scimax.table.formulaHelp	Table Formula Help	-
cmd:scimax.table.toggleFormulaHighlight	Toggle Formula Highlight	-

✅ Source Blocks

✅ Basic Babel Operations

Command ID	Description	Default Keybinding
cmd:scimax.org.executeBlock	Execute Code Block	C-RET
		C-c C-c (in src)
cmd:scimax.org.executeAllBlocks	Execute All Code Blocks	-
cmd:scimax.org.clearResults	Clear Block Results	-
cmd:scimax.org.clearAllResults	Clear All Results	-
cmd:scimax.org.showBabelOutput	Show Babel Output	-
cmd:scimax.org.checkExecutors	Check Available Executors	-
cmd:scimax.org.interruptBlockKernel	Interrupt Jupyter Kernel for Block	-
cmd:scimax.org.restartBlockKernel	Restart Jupyter Kernel for Block	-

✅ Advanced Babel Operations (scimax-ob)

Command ID	Description	Default Keybinding
cmd:scimax.ob.insertBlockAbove	Insert Block Above	-
cmd:scimax.ob.insertBlockBelow	Insert Block Below	C-c C-,
cmd:scimax.ob.insertBlockBelowSame	Insert Block Below (Same Lang)	-
cmd:scimax.ob.splitBlock	Split Block	C-c - (src)
cmd:scimax.ob.cloneBlock	Clone Block	-
cmd:scimax.ob.killBlock	Kill Block and Results	-
cmd:scimax.ob.copyBlock	Copy Block and Results	-
cmd:scimax.ob.moveBlockUp	Move Block Up	-
cmd:scimax.ob.moveBlockDown	Move Block Down	-
cmd:scimax.ob.mergeWithPrevious	Merge with Previous Block	-
cmd:scimax.ob.mergeWithNext	Merge with Next Block	-
cmd:scimax.ob.nextBlock	Next Source Block	C-DOWN
cmd:scimax.ob.previousBlock	Previous Source Block	C-UP
cmd:scimax.ob.jumpToBlock	Jump to Source Block	C-c C-b
cmd:scimax.ob.jumpToResults	Jump to Results	-
cmd:scimax.ob.executeAndNext	Execute and Next	S-RET
cmd:scimax.ob.executeAndNew	Execute and New Block	-
cmd:scimax.ob.executeToPoint	Execute to Point	-
cmd:scimax.ob.executeAll	Execute All Blocks	-
cmd:scimax.ob.clearResults	Clear Results	-
cmd:scimax.ob.clearAllResults	Clear All Results	-
cmd:scimax.ob.toggleResults	Toggle Results Visibility	-
cmd:scimax.ob.editHeader	Edit Block Header	-

✅ Extended Babel Features

Command ID	Description	Default Keybinding
cmd:scimax.babel.tangle	Tangle Source Blocks	C-c C-v t
cmd:scimax.babel.executeToPoint	Execute Blocks to Point	C-c C-v p
cmd:scimax.babel.executeInline	Execute Inline Source at Cursor	C-c C-v i
cmd:scimax.babel.executeInlineBabelCall	Execute Inline Babel Call at Cursor	-
cmd:scimax.babel.clearCache	Clear Babel Result Cache	-
cmd:scimax.babel.cacheStats	Show Babel Cache Statistics	-
cmd:scimax.babel.showQueue	Show Execution Queue	-
cmd:scimax.babel.clearQueue	Clear Execution Queue	-
cmd:scimax.babel.queueBlock	Queue Block for Async Execution	C-c C-v q
cmd:scimax.babel.pauseQueue	Pause Execution Queue	-
cmd:scimax.babel.resumeQueue	Resume Execution Queue	-
cmd:scimax.babel.showOutput	Show Babel Output	-

✅ Export

✅ Export Dispatcher

Command ID	Description	Default Keybinding
cmd:scimax.org.export	Export Org Document	-
cmd:scimax.org.exportDispatcher	Export Dispatcher	-
cmd:scimax.org.exportMenu	Export Menu (C-c C-e)	C-c C-e
cmd:scimax.org.previewHtml	Preview HTML	-

✅ HTML Export

Command ID	Description	Default Keybinding
cmd:scimax.org.exportHtml	Export to HTML	C-c C-e h h
cmd:scimax.org.exportHtmlOpen	Export to HTML and Open	C-c C-e h o

✅ LaTeX/PDF Export

Command ID	Description	Default Keybinding
cmd:scimax.org.exportLatex	Export to LaTeX	C-c C-e l l
cmd:scimax.org.exportPdf	Export to PDF	C-c C-e l p
cmd:scimax.org.exportLatexOpen	Export to PDF and Open	C-c C-e l o
cmd:scimax.org.exportBeamer	Export to Beamer (LaTeX)	-
cmd:scimax.org.exportBeamerPdf	Export to Beamer PDF	-
cmd:scimax.org.exportBeamerOpen	Export to Beamer PDF and Open	-
cmd:scimax.org.viewPdfPanel	View PDF in Panel	-
cmd:scimax.org.jumpToPdf	Jump to PDF (forward sync)	-

⚠️ LaTeX Build Profiles

Named sequences of build commands (pdflatex+bibtex, lualatex+biber, ...) defined in latex-profiles.json or settings. See Build Profiles documentation.

Command ID	Description	Default Keybinding
cmd:scimax.latex.selectBuildProfile	Select LaTeX Build Profile	-
cmd:scimax.latex.showBuildProfile	Show Active Build Profile	-
cmd:scimax.latex.createBuildProfilesFile	Create Build Profiles File	-

✅ Other Export Formats

Command ID	Description	Default Keybinding
cmd:scimax.org.exportMarkdown	Export to Markdown	C-c C-e m m

✅ Markdown File Export

Export markdown (.md) files to other formats via Pandoc. Complements the org-to-markdown export above — these commands operate on markdown source files.

Command ID	Description	Default Keybinding
cmd:scimax.markdown.exportMenu	Markdown Export Menu	-
cmd:scimax.markdown.exportHtml	Markdown → HTML	-
cmd:scimax.markdown.exportHtmlOpen	Markdown → HTML and Open	-
cmd:scimax.markdown.exportLatex	Markdown → LaTeX	-
cmd:scimax.markdown.exportLatexOpen	Markdown → LaTeX and Open	-
cmd:scimax.markdown.exportPdf	Markdown → PDF	-
cmd:scimax.markdown.exportPdfOpen	Markdown → PDF and Open	-
cmd:scimax.markdown.exportDocx	Markdown → DOCX	-
cmd:scimax.markdown.exportDocxOpen	Markdown → DOCX and Open	-

Requires Pandoc to be installed on the system.

✅ Jupyter Notebook Export

Export org documents to Jupyter notebook (.ipynb) format.

Command ID	Description	Default Keybinding
cmd:scimax.org.exportIpynb	Export to Jupyter Notebook	-
cmd:scimax.org.exportIpynbOpen	Export to Notebook and Open	-
cmd:scimax.org.exportIpynbParticipant	Export via Chat Participant	-

✅ Clipboard Export

Copy document content to clipboard in various formats for pasting into other applications.

Command ID	Description	Default Keybinding
cmd:scimax.org.clipboardHtmlRich	Copy as Rich HTML (for Word, etc.)	-
cmd:scimax.org.clipboardHtmlSource	Copy as HTML Source	-
cmd:scimax.org.clipboardLatex	Copy as LaTeX	-
cmd:scimax.org.clipboardMarkdown	Copy as Markdown	-

✅ Custom Exporters

User-defined export backends using JavaScript/TypeScript. See Custom Exporters documentation.

Command ID	Description	Default Keybinding
cmd:scimax.export.custom	Export with Custom Exporter	-
cmd:scimax.export.createExampleExporter	Create Example Exporter Template	-
cmd:scimax.export.openExportersFolder	Open User Exporters Folder	-
cmd:scimax.export.reloadCustomExporters	Reload Custom Exporters	-

✅ Links

Command ID	Description	Default Keybinding
cmd:scimax.org.insertLink	Insert Link	C-c C-l
cmd:scimax.org.openLink	Open Link at Point	C-c C-o / RET (on link)
cmd:scimax.org.storeLink	Store Link (for later insertion)	-
cmd:scimax.org.deleteFileLink	Delete File Link (and optionally file)	-
cmd:scimax.org.openExcalidraw	Open Excalidraw Drawing	(via link click)
cmd:scimax.org.insertFinderLink	Insert Link from Finder Selection (macOS)	-
cmd:scimax.org.insertChromeLink	Insert Link from Front Chrome Tab (macOS)	-

✅ Timestamps

Command ID	Description	Default Keybinding
cmd:scimax.org.insertTimestamp	Insert Timestamp	C-c .
cmd:scimax.org.insertActiveTimestamp	Insert Active Timestamp	-
cmd:scimax.org.insertInactiveTimestamp	Insert Inactive Timestamp	C-c !
cmd:scimax.org.shiftTimestampUp	Shift Timestamp Up	S-UP
cmd:scimax.org.shiftTimestampDown	Shift Timestamp Down	S-DOWN
cmd:scimax.org.shiftTimestampLeft	Shift Timestamp Left (Prev Day)	S-LEFT
cmd:scimax.org.shiftTimestampRight	Shift Timestamp Right (Next Day)	S-RIGHT
cmd:scimax.org.addRepeater	Add/Change Repeater on Timestamp	C-c C-r

✅ Clocking

Time tracking commands for measuring effort on tasks.

Command ID	Description	Default Keybinding
cmd:scimax.speed.clockIn	Clock In	I (speed cmd)
cmd:scimax.speed.clockOut	Clock Out	O (speed cmd)
cmd:scimax.org.clockReport	Generate Clock Report	-
cmd:scimax.org.clockTable	Insert Clock Table	-
cmd:scimax.clock.checkConsistency	Check Clock Consistency	-
cmd:scimax.clock.modify	Modify Clock Entry	-
cmd:scimax.clock.toggleDecorations	Toggle Clock Decorations	-

Clock entries are stored in a :LOGBOOK: drawer under the heading. Use scimax.org.clockReport to generate a summary of time spent.

✅ Agenda

✅ Agenda Views

Command ID	Description	Default Keybinding
cmd:scimax.db.agenda	Show Agenda	-
cmd:scimax.db.showTodos	Show TODO Items	-
cmd:scimax.db.deadlines	Show Upcoming Deadlines	-
cmd:scimax.agenda.currentFile	Agenda for Current File	C-c a <

✅ Advanced Agenda

Command ID	Description	Default Keybinding
cmd:scimax.agenda.menu	Open Agenda Menu	-
cmd:scimax.agenda.day	Day Agenda	-
cmd:scimax.agenda.week	Week Agenda	-
cmd:scimax.agenda.fortnight	Fortnight Agenda	-
cmd:scimax.agenda.month	Month Agenda	-
cmd:scimax.agenda.todoList	TODO List	-
cmd:scimax.agenda.deadlines	Upcoming Deadlines	-
cmd:scimax.agenda.scheduled	Scheduled Items	-
cmd:scimax.agenda.filterByTag	Agenda Filter by Tag	-
cmd:scimax.agenda.clockReport	Agenda Clock Report	-
cmd:scimax.agenda.refresh	Refresh Agenda	-
cmd:scimax.agenda.showAgenda	Show Agenda View	-
cmd:scimax.agenda.showTodos	Show TODO List View	-
cmd:scimax.agenda.groupByDate	Group Agenda by Date	-
cmd:scimax.agenda.groupByCategory	Group Agenda by Category	-
cmd:scimax.agenda.groupByPriority	Group Agenda by Priority	-
cmd:scimax.agenda.configure	Configure Agenda Files	-
cmd:scimax.agenda.gotoItem	Go to Agenda Item	-
cmd:scimax.agenda.search	Search Agenda Items	-
cmd:scimax.agenda.toggleVerbose	Toggle Verbose Mode	-
cmd:scimax.agenda.ignoreFile	Ignore File in Agenda	-
cmd:scimax.agenda.ignoreFileFromItem	Ignore File from Agenda Item	-
cmd:scimax.agenda.ignoreFileFromTab	Ignore File from Editor Tab	-
cmd:scimax.agenda.unignoreFile	Unignore File in Agenda	-
cmd:scimax.agenda.openBuffer	Open Agenda Buffer	C-c a v
cmd:scimax.agenda.buffer.goto	Agenda Buffer - Go to Item	RET (in buffer)
cmd:scimax.agenda.buffer.refresh	Agenda Buffer - Refresh	g (in buffer)
cmd:scimax.agenda.buffer.next	Agenda Buffer - Next Period	f (in buffer)
cmd:scimax.agenda.buffer.previous	Agenda Buffer - Prev Period	b (in buffer)
cmd:scimax.agenda.buffer.today	Agenda Buffer - Back to Today	. (in buffer)
cmd:scimax.agenda.buffer.cycleTodo	Agenda Buffer - Cycle TODO State	t (in buffer)

✅ Journal

✅ Basic Journal Operations

Command ID	Description	Default Keybinding
cmd:scimax.journal.today	Open Today's Journal	C-S-j
cmd:scimax.journal.new	New Journal Entry	-
cmd:scimax.journal.prev	Previous Journal Entry	M-[ (in journal)
cmd:scimax.journal.next	Next Journal Entry	M-] (in journal)
cmd:scimax.journal.goto	Go to Journal Date	-
cmd:scimax.journal.search	Search Journal	-
cmd:scimax.journal.calendar	Show Journal Calendar	-

✅ Journal Utilities

Command ID	Description	Default Keybinding
cmd:scimax.journal.refresh	Refresh Journal View	-
cmd:scimax.journal.openDirectory	Open Journal Directory	-
cmd:scimax.journal.insertTimestamp	Insert Timestamp	-
cmd:scimax.journal.quickLog	Quick Log Entry	-
cmd:scimax.journal.stats	Show Journal Statistics	-
cmd:scimax.journal.weekView	This Week's Entries	-

✅ Database and Search

✅ Basic Database Operations

Command ID	Description	Default Keybinding
cmd:scimax.db.refresh	Refresh Database (incremental)	-
cmd:scimax.db.reindex	Sync Files	-
cmd:scimax.db.rebuild	Rebuild Database (from scratch)	-
cmd:scimax.db.search	Search All Files	-
cmd:scimax.db.searchHeadings	Search Headings	-
cmd:scimax.db.browseFiles	Browse Indexed Files	-
cmd:scimax.db.setScope	Set Search Scope	-
cmd:scimax.showDbMenu	Database Menu	C-M-v

✅ Advanced Search

Command ID	Description	Default Keybinding
cmd:scimax.db.searchBlocks	Search Code Blocks	-
cmd:scimax.db.searchHashtags	Search by Hashtag	-
cmd:scimax.db.searchByTag	Search by Tag	-
cmd:scimax.db.searchByProperty	Search by Property	-
cmd:scimax.db.searchAdvanced	Advanced Search (Full Pipeline)	-

✅ Semantic Search (AI)

Command ID	Description	Default Keybinding
cmd:scimax.db.searchSemantic	Semantic Search (AI)	-
cmd:scimax.db.searchHybrid	Hybrid Search (Keywords + AI)	-
cmd:scimax.db.configureEmbeddings	Configure Embedding Service	-

✅ Database Maintenance

Command ID	Description	Default Keybinding
cmd:scimax.db.optimize	Optimize Database	-
cmd:scimax.db.clear	Clear Database	-
cmd:scimax.db.stats	Show Database Stats	-
cmd:scimax.db.rebuild	Rebuild Database	-
cmd:scimax.db.backup	Backup Database	-
cmd:scimax.db.restore	Restore Database	-
cmd:scimax.db.verify	Verify Database	-
cmd:scimax.db.toggleAutoScan	Toggle Auto-Scan on Save	-
cmd:scimax.db.cancelSync	Cancel Database Sync	-
cmd:scimax.db.cancelEmbeddings	Cancel Embedding Generation	-
cmd:scimax.database.refresh	Refresh Database	-
cmd:scimax.db.removeCurrentFile	Remove Current File from Database	-
cmd:scimax.db.removeFile	Remove File from Database	-
cmd:scimax.db.ignoreCurrentFile	Add Current File to Ignore Patterns	-
cmd:scimax.db.ignoreFile	Add File to Ignore Patterns	-

✅ Link Graph Visualization

Commands for visualizing file connections through links.

Command ID	Description	Default Keybinding
cmd:scimax.showLinkGraph	Show Link Graph for Current File	C-c S-g
cmd:scimax.showLinkGraphForFile	Show Link Graph for File	-
cmd:scimax.showLinkStats	Show Link Statistics	-

✅ Troubleshooting and Diagnostics

Commands for debugging issues and reporting problems.

Command ID	Description	Default Keybinding
cmd:scimax.showErrorLog	Show Error Log	-
cmd:scimax.clearErrors	Clear Error Log	-
cmd:scimax.showDiagnostics	Show Diagnostic Report	-
cmd:scimax.copyDiagnostics	Copy Diagnostic Report	-
cmd:scimax.reportIssue	Report Issue on GitHub	-
cmd:scimax.contextHelp	Context-Sensitive Help	-
cmd:scimax.openLogDirectory	Open Log Files Directory	-
cmd:scimax.setLogLevel	Set Logging Level	-
cmd:scimax.db.searchCapabilities	Show Search Capabilities	-

✅ References (org-ref)

✅ Citation Management

Command ID	Description	Default Keybinding
cmd:scimax.ref.insertCitation	Insert Citation	C-c ] (org/md/latex)
cmd:scimax.zotero.insertCitation	Insert Citation from Zotero	C-c z (org/md/latex)
cmd:scimax.ref.insertRef	Insert Reference Link	C-u C-c ]
cmd:scimax.ref.insertBibliography	Insert Bibliography Link	-
cmd:scimax.ref.copyBibTeX	Copy BibTeX Entry	-

✅ Citation Editing

Command ID	Description	Default Keybinding
cmd:scimax.ref.transposeCitationLeft	Transpose Citation Left	S-LEFT (on citation)
cmd:scimax.ref.transposeCitationRight	Transpose Citation Right	S-RIGHT (on citation)
cmd:scimax.ref.sortCitations	Sort Citations (Oldest First)	S-UP (on citation)
cmd:scimax.ref.sortCitationsByYear	Sort Citations (Newest First)	S-DOWN (on citation)
cmd:scimax.ref.sortCitationsAlphabetically	Sort Citations Alphabetically	-
cmd:scimax.ref.deleteCitation	Delete Citation at Cursor	C-S-k (on citation)

✅ Bibliography Management

Command ID	Description	Default Keybinding
cmd:scimax.ref.openBibliography	Open Bibliography	-
cmd:scimax.ref.fetchFromDOI	Fetch BibTeX from DOI	-
cmd:scimax.ref.searchReferences	Search References	-
cmd:scimax.ref.findCitations	Find Citations of Reference	-
cmd:scimax.ref.refresh	Refresh References	-
cmd:scimax.ref.extractBibliography	Extract Bibliography from File	-

✅ OpenAlex Integration

Command ID	Description	Default Keybinding
cmd:scimax.ref.showCitingWorks	Show Citing Works (OpenAlex)	-
cmd:scimax.ref.showRelatedWorks	Show Related Works (OpenAlex)	-
cmd:scimax.ref.searchOpenAlex	Search OpenAlex	-
cmd:scimax.ref.searchCrossRef	Search CrossRef and Add Entry	-
cmd:scimax.ref.configureOpenAlex	Configure OpenAlex API	-

✅ BibTeX Speed Commands

Speed commands for BibTeX files, active at column 0 of @entry lines.

Command ID	Description	Speed Key
cmd:scimax.bibtex.nextEntry	Next Entry	n
cmd:scimax.bibtex.previousEntry	Previous Entry	p
cmd:scimax.bibtex.jumpToEntry	Jump to Entry	j

✅ Formatting

Command ID	Description	Speed Key
cmd:scimax.bibtex.sortFields	Sort Fields	s
cmd:scimax.bibtex.downcaseEntry	Downcase Entry	d
cmd:scimax.bibtex.titleCase	Title Case Title	t
cmd:scimax.bibtex.sentenceCase	Sentence Case Title	S
cmd:scimax.bibtex.cleanEntry	Clean/Format Entry	c
cmd:scimax.bibtex.wrapBraces	Wrap in Braces	Cmd+Shift+]
cmd:scimax.bibtex.stripBraces	Strip Braces	-

The wrapBraces command wraps the selected text or word at cursor in curly braces {} for case protection (e.g., {NASA}, {Python}). The stripBraces command removes braces from the selection.

✅ Access

Command ID	Description	Speed Key
cmd:scimax.bibtex.openPdf	Open PDF	o
cmd:scimax.bibtex.openUrl	Open URL/DOI	u
cmd:scimax.bibtex.openNotes	Open Notes	N
cmd:scimax.bibtex.googleScholar	Google Scholar	g
cmd:scimax.bibtex.crossref	Open in CrossRef	x
cmd:scimax.bibtex.webOfScience	Open in Web of Science	w

✅ OpenAlex Integration

Command ID	Description	Speed Key
cmd:scimax.bibtex.showCitingWorks	Show Citing Works	C
cmd:scimax.bibtex.showRelatedWorks	Show Related Works	R
cmd:scimax.bibtex.showReferences	Show References	r

✅ Actions

Command ID	Description	Speed Key
cmd:scimax.bibtex.copyKey	Copy Citation Key	y
cmd:scimax.bibtex.copyBibtex	Copy BibTeX Entry	b
cmd:scimax.bibtex.killEntry	Delete Entry	k
cmd:scimax.bibtex.generateKey	Generate Citation Key	K
cmd:scimax.bibtex.updateFromWeb	Update from Web	U
cmd:scimax.bibtex.help	Show Help	?

✅ File-Wide Commands

These commands operate on the entire file. They appear as code lens buttons at the top of .bib files.

Command ID	Description	Code Lens
cmd:scimax.bibtex.validateFile	Validate File	✓ Validate
cmd:scimax.bibtex.showStatistics	Show File Statistics	N entries
cmd:scimax.bibtex.sortEntries	Sort Entries	-
cmd:scimax.bibtex.applyToAllEntries	Apply to All Entries	-

✅ Journal Abbreviations

Commands for managing journal name abbreviations in BibTeX entries.

Command ID	Description	Default Keybinding
cmd:scimax.bibtex.toggleJournalAbbreviation	Toggle Journal Abbreviation	-
cmd:scimax.bibtex.abbreviateAllJournals	Abbreviate All Journals	-
cmd:scimax.bibtex.expandAllJournals	Expand All Journals	-
cmd:scimax.bibtex.searchJournalAbbreviations	Search Journal Abbreviations	-
cmd:scimax.bibtex.updateJournalAbbreviations	Update Abbreviations from Online	-
cmd:scimax.bibtex.addJournalAbbreviation	Add Custom Journal Abbreviation	-
cmd:scimax.bibtex.manageJournalAbbreviations	Manage Custom Journal Abbreviations	-
cmd:scimax.bibtex.journalAbbreviationStats	Journal Abbreviation Statistics	-

✅ Notebook

Command ID	Description	Default Keybinding
cmd:scimax.notebook.new	New Notebook	-
cmd:scimax.notebook.open	Open Notebook	-
cmd:scimax.notebook.openMasterFile	Open Notebook Master File	-
cmd:scimax.notebook.recentFiles	Recent Files in Notebook	-
cmd:scimax.notebook.search	Search in Notebook	-
cmd:scimax.notebook.agenda	Notebook Agenda	-
cmd:scimax.notebook.addCollaborator	Add Collaborator	-
cmd:scimax.notebook.archive	Archive Notebook	-
cmd:scimax.notebook.settings	Notebook Settings	-
cmd:scimax.notebook.index	Index Notebook	-
cmd:scimax.notebook.info	Notebook Info	-
cmd:scimax.notebook.remove	Remove Notebook from Tracking	-

✅ Navigation

✅ Fuzzy Search (Swiper)

Command ID	Description	Default Keybinding
cmd:scimax.fuzzySearch	Fuzzy Search (Current File)	C-c s
cmd:scimax.fuzzySearchOpenFiles	Fuzzy Search (Open Files)	C-c S-s
cmd:scimax.fuzzySearchOutline	Fuzzy Search (Outline)	C-c M-s
cmd:scimax.fuzzySearchRecentFiles	Fuzzy Search (Recent org/md)	C-x b

👀 Jump (Avy)

Command ID	Description	Default Keybinding
cmd:scimax.jump.gotoChar	Jump to Character	C-c j c
cmd:scimax.jump.gotoChar2	Jump to 2-Character Sequence	C-c j j
cmd:scimax.jump.gotoCharTimer	Jump to Text (Timer)	C-c j t
cmd:scimax.jump.gotoWord	Jump to Word	C-c j w
cmd:scimax.jump.gotoLine	Jump to Line	C-c j l
cmd:scimax.jump.gotoSymbol	Jump to Symbol	C-c j o
cmd:scimax.jump.gotoSubword	Jump to Subword	C-c j s
cmd:scimax.jump.gotoHeading	Jump to Heading	C-c j h
cmd:scimax.jump.copyLine	Jump Copy Line	-
cmd:scimax.jump.killLine	Jump Kill Line	-
cmd:scimax.jump.listCommands	Jump Commands (menu)	C-c j ?
cmd:scimax.jump.cancel	Jump Cancel	Escape (in a jump)
cmd:scimax.jump.backspace	Jump Delete Last Character	Backspace (in a jump)

✅ Recenter

Command ID	Description	Default Keybinding
cmd:scimax.recenterTopBottom	Recenter Top Bottom	C-l

Emacs-style recenter-top-bottom. Pressing C-l repeatedly while the cursor stays put cycles the cursor line through three scroll positions: center on the first press, top on the second, bottom on the third, then back to center. Moving the cursor or switching editors resets the cycle to center.

✅ Projectile

Command ID	Description	Default Keybinding
cmd:scimax.projectile.switch	Switch Project	C-c p p
cmd:scimax.projectile.switchActions	Project Picker Actions	M-o
cmd:scimax.projectile.findFile	Find File in Project	C-c p f
cmd:scimax.projectile.findFileInKnownProjects	Find File in Known Projects	-
cmd:scimax.projectile.search	Search in Project	C-c p s
cmd:scimax.projectile.root	Open Project Root	C-c p d
cmd:scimax.projectile.add	Add Project	C-c p a
cmd:scimax.projectile.remove	Remove Project	-
cmd:scimax.projectile.scan	Scan Directory for Projects	-
cmd:scimax.projectile.info	Project Info	-
cmd:scimax.projectile.cleanup	Cleanup Non-existent Projects	-
cmd:scimax.projectile.refreshTree	Refresh Projects	-
cmd:scimax.projectile.filterProjects	Filter Projects	-
cmd:scimax.projectile.clearFilter	Clear Project Filter	-
cmd:scimax.projectile.sortByName	Sort Projects by Name	-
cmd:scimax.projectile.sortByNameDesc	Sort Projects by Name (Desc)	-
cmd:scimax.projectile.sortByRecent	Sort Projects by Recent	-

✅ Editmarks

✅ Mark Edits

Command ID	Description	Default Keybinding
cmd:scimax.editmarks.insertion	Mark Insertion	C-c e i
cmd:scimax.editmarks.deletion	Mark Deletion	C-c e d
cmd:scimax.editmarks.comment	Insert Edit Comment	C-c e c
cmd:scimax.editmarks.typo	Mark Typo Correction	C-c e t

✅ Review Edits

Command ID	Description	Default Keybinding
cmd:scimax.editmarks.accept	Accept Edit Mark	C-c e a
cmd:scimax.editmarks.reject	Reject Edit Mark	C-c e r
cmd:scimax.editmarks.acceptAll	Accept All Edit Marks	-
cmd:scimax.editmarks.rejectAll	Reject All Edit Marks	-
cmd:scimax.editmarks.next	Next Edit Mark	C-c e ]
cmd:scimax.editmarks.prev	Previous Edit Mark	C-c e [
cmd:scimax.editmarks.summary	Show Edit Marks Summary	C-c e s

✅ Hydra

Command ID	Description	Default Keybinding
cmd:scimax.hydra.show	Show Hydra Menu	-
cmd:scimax.hydra.hide	Hide Hydra Menu	-
cmd:scimax.hydra.back	Hydra Menu Back	-
cmd:scimax.hydra.main	Main Menu	C-c m
cmd:scimax.hydra.database	Database Menu	-
cmd:scimax.hydra.contextMenu	Context Menu	C-c C-m

✅ Markup

Command ID	Description	Default Keybinding
cmd:scimax.markup.bold	Bold (Markup)	C-c b
cmd:scimax.markup.italic	Italic (Markup)	C-c i
cmd:scimax.markup.underline	Underline (Markup)	C-c _
cmd:scimax.markup.code	Code (Markup)	C-c `
cmd:scimax.markup.verbatim	Verbatim (Markup)	C-c =
cmd:scimax.markup.strikethrough	Strikethrough (Markup)	C-c +
cmd:scimax.markup.subscript	Subscript (Markup)	-
cmd:scimax.markup.superscript	Superscript (Markup)	-
cmd:scimax.markup.latexMath	LaTeX Math (Markup)	-
cmd:scimax.markup.latexDisplayMath	LaTeX Display Math (Markup)	-
cmd:scimax.markup.command	Command (Emacs-style)	C-c '

✅ Word Case & Navigation

Command ID	Description	Default Keybinding
cmd:scimax.capitalizeWord	Capitalize Word and Move Next	M-c
cmd:scimax.lowercaseWord	Lowercase Word and Move Next	M-l
cmd:scimax.uppercaseWord	Uppercase Word and Move Next	M-u
cmd:scimax.beginningOfBuffer	Beginning of Buffer	M-<
cmd:scimax.endOfBuffer	End of Buffer	M->

note that M-u does not work on a Mac because it is intercepted to make an accented character.

✅ Speed Commands

Speed commands are single-key commands available when cursor is at the beginning of a heading line (with scimax.speedCommandsEnabled).

✅ Navigation

Command ID	Description	Speed Key
cmd:scimax.speed.nextSibling	Next Sibling Heading	f
cmd:scimax.speed.previousSibling	Previous Sibling	b
cmd:scimax.org.nextHeading	Next Heading	n
cmd:scimax.org.previousHeading	Previous Heading	p
cmd:scimax.org.parentHeading	Parent Heading	u
cmd:scimax.org.jumpToHeading	Jump to Heading	j
cmd:scimax.speed.gotoMenu	Go To Menu	g
cmd:scimax.speed.firstHeading	First Heading	-
cmd:scimax.speed.lastHeading	Last Heading	-

✅ Visibility

Command ID	Description	Speed Key
cmd:scimax.org.cycleGlobalFold	Cycle Global Fold	c
cmd:scimax.speed.showChildren	Show All Children	C (S-c)
cmd:scimax.speed.overview	Overview (Fold All)	o

✅ Structure Editing

Command ID	Description	Speed Key
cmd:scimax.heading.moveUp	Move Heading Up	U (S-u)
cmd:scimax.heading.moveDown	Move Heading Down	D (S-d)
cmd:scimax.heading.demote	Demote Heading	r
cmd:scimax.heading.promote	Promote Heading	l
cmd:scimax.heading.demoteSubtree	Demote Subtree	R (S-r)
cmd:scimax.heading.promoteSubtree	Promote Subtree	L (S-l)
cmd:scimax.org.killSubtree	Kill Subtree	k
cmd:scimax.speed.yankSubtree	Yank (Paste) Subtree	y
cmd:scimax.org.refile	Refile Subtree	w
cmd:scimax.org.cloneSubtree	Clone Subtree	W (S-w)
cmd:scimax.org.markSubtree	Mark (Select) Subtree	m, @ (S-2)
cmd:scimax.org.sortEntries	Sort Entries	^ (S-6)

✅ TODO and Tags

Command ID	Description	Speed Key
cmd:scimax.org.cycleTodo	Cycle TODO State	t
cmd:scimax.speed.setTags	Set Tags	: (S-;)
cmd:scimax.speed.priorityA	Set Priority A	1
cmd:scimax.speed.priorityB	Set Priority B	2
cmd:scimax.speed.priorityC	Set Priority C	3
cmd:scimax.speed.priorityNone	Remove Priority	0

✅ Scheduling and Timestamps

Command ID	Description	Speed Key
cmd:scimax.speed.schedule	Add/Edit SCHEDULED	s
cmd:scimax.speed.deadline	Add/Edit DEADLINE	d
cmd:scimax.org.insertTimestamp	Insert Timestamp	.
cmd:scimax.org.shiftTimestampUp	Shift Timestamp Up	,

✅ Properties and Clocking

Command ID	Description	Speed Key
cmd:scimax.speed.setProperty	Set Property	P (S-p)
cmd:scimax.speed.setEffort	Set Effort	e
cmd:scimax.speed.clockIn	Clock In	I (S-i)
cmd:scimax.speed.clockOut	Clock Out	O (S-o)

✅ Archiving

Command ID	Description	Speed Key
cmd:scimax.speed.archiveSubtree	Archive Subtree	a
cmd:scimax.speed.toggleArchiveTag	Toggle Archive Tag	A (S-a)
cmd:scimax.speed.archiveToSibling	Archive to Sibling	$ (S-4)

✅ Help

Command ID	Description	Speed Key
cmd:scimax.speed.help	Speed Commands Help	? (S-/)
cmd:scimax.speed.toggle	Toggle Speed Commands	C-c C-x s

✅ LaTeX

Comprehensive LaTeX editing support with structural navigation, environment manipulation, and compilation.

✅ Section Navigation

Command ID	Description	Default Keybinding
cmd:scimax.latex.nextSection	Next Section	C-c C-n
cmd:scimax.latex.previousSection	Previous Section	C-c C-p
cmd:scimax.latex.parentSection	Parent Section	C-c C-u
cmd:scimax.latex.nextSiblingSection	Next Sibling Section	C-c C-f
cmd:scimax.latex.previousSiblingSection	Previous Sibling Section	C-c C-b
cmd:scimax.latex.firstSection	First Section	-
cmd:scimax.latex.lastSection	Last Section	-
cmd:scimax.latex.jumpToSection	Jump to Section	C-c j / C-c C-j

✅ Environment Navigation

Command ID	Description	Default Keybinding
cmd:scimax.latex.nextEnvironment	Next Environment	-
cmd:scimax.latex.previousEnvironment	Previous Environment	-
cmd:scimax.latex.jumpToEnvironment	Jump to Environment	-
cmd:scimax.latex.jumpToLabel	Jump to Label	C-c l
cmd:scimax.latex.jumpToMatchingEnvironment	Jump to Matching Begin/End	C-c %

✅ Structure Editing

Command ID	Description	Default Keybinding
cmd:scimax.latex.promoteSection	Promote Section	M-LEFT
cmd:scimax.latex.demoteSection	Demote Section	M-RIGHT
cmd:scimax.latex.promoteSubtree	Promote Subtree	M-S-LEFT
cmd:scimax.latex.demoteSubtree	Demote Subtree	M-S-RIGHT
cmd:scimax.latex.moveSectionUp	Move Section Up	M-UP
cmd:scimax.latex.moveSectionDown	Move Section Down	M-DOWN
cmd:scimax.latex.markSection	Mark Section	C-c @
cmd:scimax.latex.killSection	Kill Section	-
cmd:scimax.latex.cloneSection	Clone Section	-
cmd:scimax.latex.insertSection	Insert Section	-
cmd:scimax.latex.insertSubsection	Insert Subsection	-
cmd:scimax.latex.narrowToSection	Narrow to Section	-
cmd:scimax.latex.widen	Widen (Unfold All)	-

✅ Environment Manipulation

Command ID	Description	Default Keybinding
cmd:scimax.latex.selectEnvironment	Select Environment	C-c C-e
cmd:scimax.latex.selectEnvironmentContent	Select Environment Content	-
cmd:scimax.latex.changeEnvironment	Change Environment	C-c e
cmd:scimax.latex.wrapInEnvironment	Wrap in Environment	C-c w
cmd:scimax.latex.unwrapEnvironment	Unwrap Environment	-
cmd:scimax.latex.deleteEnvironment	Delete Environment	-
cmd:scimax.latex.toggleEnvironmentStar	Toggle Environment Star	C-c *
cmd:scimax.latex.addLabel	Add Label to Environment	C-c C-l
cmd:scimax.latex.addCaption	Add Caption to Environment	-
cmd:scimax.latex.environmentInfo	Show Environment Info	-

✅ Compilation and PDF Viewing

Command ID	Description	Default Keybinding
cmd:scimax.latex.compile	Compile Document	C-c C-c
cmd:scimax.latex.viewPdf	View PDF (External)	C-c C-v
cmd:scimax.latex.viewPdfPanel	View PDF (Built-in Panel)	C-c v
cmd:scimax.latex.compileAndView	Compile and View PDF	C-c C-a
cmd:scimax.latex.compileAndViewPanel	Compile and View PDF (Panel)	C-c S-a
cmd:scimax.latex.syncTexForward	SyncTeX Forward Search	C-c g
cmd:scimax.latex.syncToPdfPanel	Sync to PDF Panel	C-c C-s
cmd:scimax.latex.clean	Clean Auxiliary Files	C-c C-k
cmd:scimax.latex.openPreview	Open LaTeX Live Preview	C-c C-e l v
cmd:scimax.latex.forwardSync	Sync PDF to Cursor Position	C-c C-e l s
cmd:scimax.latex.rebuild	Rebuild PDF	-
cmd:scimax.latex.showOutput	Show LaTeX Build Output	-
cmd:scimax.latex.jumpToPdf	Jump to PDF (compile if needed)	-

✅ Error Navigation

Command ID	Description	Default Keybinding
cmd:scimax.latex.nextError	Go to Next Error	C-c `
cmd:scimax.latex.previousError	Go to Previous Error	C-c S-`
cmd:scimax.latex.showErrors	Show All Errors	C-c !

✅ Insertion Commands

Command ID	Description	Default Keybinding
cmd:scimax.latex.insertFigure	Insert Figure	-
cmd:scimax.latex.insertTable	Insert Table	-
cmd:scimax.latex.insertEquation	Insert Equation	-

✅ Utilities

Command ID	Description	Default Keybinding
cmd:scimax.latex.format	Format Document	C-c C-q
cmd:scimax.latex.wordCount	Word Count	-
cmd:scimax.latex.addToDictionary	Add Word to Dictionary	-
cmd:scimax.latex.showInverseSyncTeXCommand	Show Inverse SyncTeX Command	-

✅ Speed Commands

Speed commands are available when cursor is at the beginning of a section line.

Command ID	Description	Speed Key
cmd:scimax.latex.speedCommandHelp	Speed Command Help	?

Section speed commands (at \section, \subsection, etc.):

n :: Next section
p :: Previous section
f :: Next sibling
b :: Previous sibling
u :: Parent section
j :: Jump to section
L :: Promote section
R :: Demote section
U :: Move section up
D :: Move section down
m :: Mark section
k :: Kill section
c :: Clone section
i :: Insert section
Tab :: Toggle fold

✅ Environment Speed Commands

Environment speed commands available at \begin{...} lines.

Command ID	Description	Speed Key
cmd:scimax.latex.envSpeedCommand	Environment Speed Command	-
cmd:scimax.latex.envSpeedCommandHelp	Environment Speed Help	?

Environment speed command keys:

n :: Next environment
p :: Previous environment
j :: Jump to environment
s :: Select environment
c :: Change environment
k :: Kill environment
w :: Wrap in environment
u :: Unwrap environment
* :: Toggle star
l :: Add label
C :: Add caption
i :: Environment info

✅ LaTeX Cache Management

Command ID	Description	Default Keybinding
cmd:scimax.clearLatexCache	Clear LaTeX Preview Cache	-
cmd:scimax.checkLatexTools	Check LaTeX Tools Availability	-
cmd:scimax.latexCacheStats	Show LaTeX Cache Statistics	-

✅ Capture

Command ID	Description	Default Keybinding
cmd:scimax.capture	Capture	C-c c
cmd:scimax.captureByKey	Capture by Key	-
cmd:scimax.capture.todo	Quick Capture TODO	C-c t
cmd:scimax.capture.note	Quick Capture Note	-
cmd:scimax.capture.createTemplate	Create Capture Template	-
cmd:scimax.capture.listTemplates	List Capture Templates	-
cmd:scimax.capture.configure	Configure Capture Templates	-

✅ Templates

Insert and manage file templates for org, markdown, and LaTeX files.

✅ Insert Templates

Command ID	Description	Default Keybinding
cmd:scimax.templates.insert	Insert Template	-
cmd:scimax.templates.insertOrg	Insert Org Template	-
cmd:scimax.templates.insertMarkdown	Insert Markdown Template	-
cmd:scimax.templates.insertLatex	Insert LaTeX Template	-
cmd:scimax.templates.quickInsert	Quick Insert Template	C-c C-t i

✅ New Files from Templates

Command ID	Description	Default Keybinding
cmd:scimax.templates.newFile	New File from Template	C-c C-t i
cmd:scimax.templates.newOrgFile	New Org File from Template	-
cmd:scimax.templates.newMarkdownFile	New Markdown from Template	-
cmd:scimax.templates.newLatexFile	New LaTeX from Template	-

✅ Template Management

Command ID	Description	Default Keybinding
cmd:scimax.templates.createFromSelection	Create Template from Selection	-
cmd:scimax.templates.openDirectory	Open Templates Directory	-
cmd:scimax.templates.editTemplates	Edit User Templates	-
cmd:scimax.templates.list	List Templates	-
cmd:scimax.templates.reload	Reload Templates	-

✅ Manuscript

Commands for preparing LaTeX manuscripts for journal submission by flattening includes.

Command ID	Description	Default Keybinding
cmd:scimax.manuscript.flatten	Flatten Manuscript for Submission	-
cmd:scimax.manuscript.preview	Preview Manuscript Flattening	-
cmd:scimax.manuscript.flattenToDirectory	Flatten Manuscript to Directory	-

These commands help prepare LaTeX manuscripts for submission by:

Expanding all \input{} and \include{} commands
Copying referenced figures and assets
Creating a self-contained submission directory

✅ Image Overlays

Command ID	Description	Default Keybinding
cmd:scimax.imageOverlays.toggle	Toggle Image Overlays	-
cmd:scimax.imageOverlays.toggleCurrentFile	Toggle Image Overlays for Current File	-
cmd:scimax.imageOverlays.refresh	Refresh Image Overlays	-
cmd:scimax.imageOverlays.clearCache	Clear Image Overlay Cache	-
cmd:scimax.imageOverlays.showStats	Show Image Overlay Cache Statistics	-
cmd:scimax.insertScreenshot	Insert Screenshot	F10 (org/md)

Note: On macOS, the first time you use F10 for screenshots, you may need to grant screen recording permission to VS Code in System Settings > Privacy & Security > Screen Recording, then restart VS Code. See Inserting Screenshots for details.

✅ Spelling

Commands for navigating spelling errors. Requires VS Code spell-checking extension.

Command ID	Description	Default Keybinding
cmd:scimax.spelling.nextError	Go to Next Spelling Error	-
cmd:scimax.spelling.previousError	Go to Previous Spelling Error	-

✅ Jupyter

✅ Kernel Management

Command ID	Description	Default Keybinding
cmd:scimax.jupyter.showKernels	Show Available Jupyter Kernels	-
cmd:scimax.jupyter.showRunning	Show Running Kernels	-
cmd:scimax.jupyter.startKernel	Start Jupyter Kernel	-
cmd:scimax.jupyter.changeKernel	Change Jupyter Kernel	-
cmd:scimax.jupyter.restartKernel	Restart Jupyter Kernel	-
cmd:scimax.jupyter.interruptKernel	Interrupt Jupyter Kernel	-
cmd:scimax.jupyter.shutdownKernel	Shutdown Jupyter Kernel	-
cmd:scimax.jupyter.shutdownAll	Shutdown All Jupyter Kernels	-

✅ Appendix: Keybinding Quick Reference

✅ Most Common Keybindings

Keybinding	Command
C-RET	Execute code block / Insert heading
C-c C-e	Export dispatcher
C-c C-j	Jump to heading
C-c C-t	Cycle TODO state
C-c C-l	Insert link
C-c C-o	Open link
C-c ]	Insert citation
C-c .	Insert timestamp
C-c m	Main hydra menu
C-c s	Fuzzy search
C-c p p	Switch project
C-S-j	Open today's journal
TAB	Cycle folding (on heading)
S-TAB	Global cycle folding
M-LEFT/RIGHT	Promote/demote heading
M-UP/DOWN	Move heading/subtree

✅ Export Keybindings

Keybinding	Export Target
C-c C-e h h	HTML
C-c C-e h o	HTML and open
C-c C-e l l	LaTeX
C-c C-e l p	PDF
C-c C-e l o	PDF and open
C-c C-e l v	LaTeX live preview
C-c C-e m m	Markdown

✅ Babel/Source Block Keybindings

Keybinding	Action
C-RET	Execute block
C-c C-c	Execute block (in src)
S-RET	Execute and next
C-c C-v t	Tangle
C-c C-v p	Execute to point
C-c C-v i	Execute inline
C-c C-v q	Queue block
C-DOWN	Next source block
C-UP	Previous source block
C-c C-n	Insert block below
C-c C-b	Jump to block

✅ Project and Navigation Keybindings

Keybinding	Action
C-c p p	Switch project
C-c p f	Find file in project
C-c p s	Search in project
C-c p d	Open project root
C-c p a	Add project
C-c s	Fuzzy search (current)
C-c S-s	Fuzzy search (open files)
C-c M-s	Fuzzy search (outline)
C-c j c	Jump to character
C-c j j	Jump to 2-char sequence
C-c j w	Jump to word

✅ Help System

Commands for discovering keybindings and command functionality.

Command ID	Description	Default Keybinding
cmd:scimax.help.describeCommand	Describe Command	C-h f
cmd:scimax.help.describeKey	Describe Key	C-h k
cmd:scimax.help.listKeybindings	List All Keybindings	C-h b
cmd:scimax.help.describeVariable	Describe Setting	C-h v
cmd:scimax.help.apropos	Search Documentation	C-h a
cmd:scimax.update	Update from GitHub

scimax.help.describeCommand

Shows the keybindings for a specific command. Useful for learning keyboard shortcuts.

scimax.help.describeKey

Describes what a specific key combination does. Enter the key sequence to see its bound command.

scimax.help.listKeybindings

Lists all keybindings defined by the extension. Opens a quick pick to browse available shortcuts.

scimax.help.describeVariable

Browse all scimax settings with completion. Shows the setting type, default value, current value, and description. Select a setting to open VS Code Settings.

scimax.help.apropos

Search the documentation for keywords. Enter search terms to find relevant documentation sections. Results are ranked by relevance (headings, commands, keybindings, content). Select a result to view details or open the documentation file.

✅ scimax.update

Update Scimax VS Code from GitHub releases. This command:

Fetches the latest release from the GitHub repository
Shows the current version vs. the latest available version
Downloads the VSIX file with progress indication
Installs it using VS Code's extension manager
Offers to reload VS Code to activate the new version

This provides an easy way to update without leaving VS Code. Requires the repository to have GitHub releases with VSIX files attached.

✅ Linting

Commands for checking org-mode document quality.

Command ID	Description	Default Keybinding
cmd:scimax.org.lint	Run Linter	-
cmd:scimax.org.lintCheckers	Show Lint Checkers	-

scimax.org.lint

Runs the org-mode linter on the current document. The linter checks for:

Duplicate IDs
Broken internal links
Missing TODO keywords in sequences
Unbalanced brackets and quotes
Invalid timestamps
Missing required properties
And more

Results appear in the Problems panel.

scimax.org.lintCheckers

Shows available lint checkers and allows enabling/disabling specific checks.

✅ Mark Ring

Emacs-style mark ring for navigation and selection. Save cursor positions (marks) and return to them later. Each document has its own mark ring, plus there's a global mark ring that tracks positions across all documents.

Command ID	Description	Default Keybinding
cmd:scimax.mark.set	Set Mark (for selection)	C-SPC
cmd:scimax.mark.cancel	Cancel Selection	C-g
cmd:scimax.mark.push	Push Mark	C-c SPC
cmd:scimax.mark.pop	Pop Mark	C-u C-SPC
cmd:scimax.mark.popGlobal	Pop Global Mark	C-x C-SPC
cmd:scimax.mark.exchange	Exchange Point and Mark	C-x C-x
cmd:scimax.mark.selectToMark	Select to Mark	-
cmd:scimax.mark.show	Show Mark Ring	-
cmd:scimax.mark.clear	Clear Mark Ring	-
cmd:scimax.mark.clearAll	Clear All Mark Rings	-

✅ Mark Ring Concepts

*Mark*: A saved cursor position that you can return to
*Point*: The current cursor position
*Mark Ring*: A stack of marks (per-document), most recent first (default size: 16)
*Global Mark Ring*: A cross-file stack of marks for navigating between documents
*Selection Mode*: When mark is set, cursor movement extends the selection from the mark

✅ Common Workflows

Setting a Mark for Selection

Press C-SPC to set mark at current position (line flashes briefly as feedback)
Move cursor to end of desired selection - the region automatically expands
Press C-SPC again to deactivate selection mode (toggle behavior)
Press C-g to cancel selection and collapse to cursor position

Returning to Previous Positions

Press C-SPC C-SPC to push mark without activating selection mode
Navigate elsewhere in the file
Press C-u C-SPC to pop the most recent mark and jump to it
Current position is saved before jumping, so you can return with another pop

Viewing the Mark Ring

Run scimax.mark.show from command palette
Quick pick shows local marks and global marks with line previews
Select an entry to jump to that position
Timestamps show how long ago each mark was set

✅ Rectangle

Emacs-style rectangle editing commands. A rectangle is a column-aligned block of text defined by two corners of the current selection. These commands operate on the rectangular region rather than contiguous text.

Command ID	Description	Default Keybinding
cmd:scimax.rectangle.kill	Kill Rectangle	C-x r k
cmd:scimax.rectangle.copy	Copy Rectangle	C-x r M-w
cmd:scimax.rectangle.delete	Delete Rectangle	C-x r d
cmd:scimax.rectangle.yank	Yank Rectangle	C-x r y
cmd:scimax.rectangle.open	Open Rectangle	C-x r o
cmd:scimax.rectangle.clear	Clear Rectangle	C-x r c
cmd:scimax.rectangle.numberLines	Number Lines (Rectangle)	C-x r S-n
cmd:scimax.rectangle.string	String Rectangle	C-x r t
cmd:scimax.rectangle.confirm	Confirm Rectangle Operation	RET (mark mode)
cmd:scimax.rectangle.cancel	Cancel Rectangle Operation	ESC (mark mode)

✅ Rectangle Concepts

*Rectangle*: A column-aligned region of text defined by two corners (the selection's anchor and active positions)
*Rectangle Clipboard*: A separate clipboard (not the system clipboard) that stores the last killed/copied rectangle. This matches Emacs behavior.
*Kill*: Delete the rectangle and save it to the rectangle clipboard
*Yank*: Insert the rectangle clipboard contents at the cursor position

✅ Common Workflows

Cut and Paste a Column

Select the rectangular region (anchor at one corner, cursor at the opposite corner)
Press C-x r k to kill the rectangle
Move cursor to the insertion point
Press C-x r y to yank the rectangle

Add a Prefix to Multiple Lines

Place cursor at column 0 of the first line, select down to the last line (zero-width selection at column 0)
Press C-x r t and enter the prefix string (e.g. =// = for comments)
The string is inserted at column 0 on each line

Number a List

Select the rectangular region where numbers should be inserted
Press C-x r S-n
Enter the starting number (default 1) and optional format string
Line numbers are inserted, replacing the rectangle content

Remove a Column of Text

Select the rectangular region to remove
Press C-x r d to delete without saving, or C-x r k to save for later yanking

✅ Publishing

Commands for publishing org files to HTML, creating static sites similar to Emacs org-publish.

Command ID	Description	Default Keybinding
cmd:scimax.publish.init	Initialize Publishing Project	-
cmd:scimax.publish.project	Publish Project	-
cmd:scimax.publish.all	Publish All Projects	-
cmd:scimax.publish.file	Publish Current File	-
cmd:scimax.publish.preview	Preview Published Site	-
cmd:scimax.publish.openConfig	Open Publishing Config	-

Setting Up a Publishing Project

Run scimax.publish.init to create a publishing configuration
Configure the project in the generated .org-publish.json file
Use scimax.publish.project to publish the configured project

Publishing Configuration

The .org-publish.json file configures:

Source directory for org files
Output directory for HTML
Include/exclude patterns
HTML template settings
Asset handling (CSS, images)

✅ Query Replace

Interactive search and replace.

Command ID	Description	Default Keybinding
cmd:scimax.queryReplace	Query Replace	M-%

Provides Emacs-style interactive query-replace with confirmation for each replacement.

✅ Utilities

Miscellaneous utility commands.

Command ID	Description	Default Keybinding
cmd:scimax.findFile	Find File	C-x C-f
cmd:scimax.findFileHome	Find File in Home Directory	-
cmd:scimax.findFileWorkspace	Find File in Workspace	-
cmd:scimax.insertFile	Insert File Contents	C-x i
cmd:scimax.insertOcrScreenshot	Insert OCR Screenshot	S-F10
cmd:scimax.googleSearch	Google Search Selection	C-c C-g
cmd:scimax.killLine	Kill Line (copy to clipboard)	C-k
cmd:scimax.openTerminalHere	Open Terminal in Document's Directory	-
cmd:scimax.openInNewWindow	Open File/Folder in New Window	-
cmd:scimax.dired.open	Open Dired (Directory Editor)	C-x d
cmd:scimax.dired.openCurrent	Open Dired for Current File Dir	-
cmd:scimax.dired.openWorkspace	Open Dired for Workspace	-
cmd:scimax.replaceNonAscii	Replace Non-ASCII Characters	-
cmd:scimax.showDebugInfo	Show Debug/Diagnostic Info	-

Dired Commands

Dired (Directory Editor) provides Emacs-style file management. Open with C-x d and use these keys in the dired panel:

Navigation: n/p (next/prev), RET (open), ^ (parent), g (refresh)
Marking: m (mark), u (unmark), U (unmark all), t (toggle marks)
Operations: D (delete), C (copy), R (rename/move), + (create directory)
WDired: C-x C-q (enter edit mode), C-c C-c (commit), C-c C-k (cancel)

See Dired documentation for full details.

scimax.replaceNonAscii

Replaces common non-ASCII characters (smart quotes, em-dashes, etc.) with their ASCII equivalents. Useful for preparing documents for systems that don't handle Unicode well.

scimax.showDebugInfo

Displays diagnostic information about the scimax extension, including version, enabled features, and configuration state. Useful for troubleshooting.

✅ Index

This document contains 310+ commands organized into 27 categories with their keybindings and descriptions.

For configuration options, see the VS Code settings under scimax.*.

For more information about the Scimax VS Code extension, visit the project repository.